cleaning manim and improving rtraining setup

Makefile

@@ -35,7 +35,7 @@ SWEEP_ENV_LOAD = set -a; [ -f "$(SWEEP_ENV_FILE)" ] && . "$(SWEEP_ENV_FILE)" ||
 
 .PHONY: help
 help:
-	@echo "pdf.build pdf.watch pdf.clean pdf.genpop pdf.genpop.watch pdf.arxiv | test.backend test.e2e test.all | web.dev | install | train | benchmark | benchmark.simple | benchmark.agent | train.agent | train.bootstrap | stats.lines"
+	@echo "pdf.build pdf.watch pdf.clean pdf.genpop pdf.genpop.watch pdf.arxiv | test.backend test.e2e test.all | web.dev | install | train | benchmark | benchmark.simple | benchmark.agent | train.agent | train.bootstrap | stats.lines | manim.render manim.render.all"
 	@echo "backend.server backend.provider backend.worker | platform.up platform.down platform.logs | docker.train.publish"
 	@echo "data.pull data.push | study.margin-erosion study.margin-erosion.quick study.margin-erosion.plot"
 	@echo ""
@@ -201,3 +201,10 @@ count-lines:
 
 all:
 	@$(NX) run paper:build
+
+.PHONY: manim.render manim.render.all
+manim.render:
+	@$(NX) run manim:render
+
+manim.render.all:
+	@$(NX) run manim:render-all

engine/benchmark.py

@@ -1,12 +1,32 @@
 from __future__ import annotations
 
+import os
+import subprocess
+import sys
+
 import argparse
 import json
 import logging
-import os
 from datetime import datetime, UTC
 from pathlib import Path
 
+# clear stale TPU locks on startup
+if os.path.exists("/dev/accel0"):
+    try:
+        subprocess.run(
+            ["rm", "-f", "/tmp/.libtpu_lockfile", "/tmp/libtpu_lockfile"],
+            stderr=subprocess.DEVNULL,
+        )
+    except:
+        pass
+
+try:
+    import jax
+
+    jax.config.update("jax_threefry_partitionable", True)
+except ImportError:
+    pass
+
 import matplotlib.pyplot as plt
 import numpy as np
 import pandas as pd

engine/jax/robust.py

@@ -28,6 +28,8 @@ try:
 except ImportError:
     _JAX_OK = False
 
+_JAX_RUNTIME_OK = True
+
 
 def _demand_for_actor_jax(prices, mean, std, noise_std, key):
     """d(p;theta) = max(0, val - price + noise), normalized to sum 100."""
@@ -104,7 +106,9 @@ def select_adversarial_alpha_jax(
     falls back to a pure-numpy sequential loop when JAX is unavailable so the
     wrapper can call this function unconditionally.
     """
-    if not _JAX_OK:
+    global _JAX_RUNTIME_OK
+
+    if not _JAX_OK or not _JAX_RUNTIME_OK:
         return _fallback(
             candidates,
             prices,
@@ -117,28 +121,45 @@ def select_adversarial_alpha_jax(
             reward_profit_weight,
         )
 
-    k = len(candidates)
+    try:
-    key = jax.random.PRNGKey(rng_seed)
+        k = len(candidates)
-    keys = jax.random.split(key, k)
+        key = jax.random.PRNGKey(rng_seed)
+        keys = jax.random.split(key, k)
 
-    rewards = np.asarray(
+        rewards = np.asarray(
-        _reward_batched(
+            _reward_batched(
-            jnp.asarray(candidates, dtype=jnp.float32),
+                jnp.asarray(candidates, dtype=jnp.float32),
-            jnp.asarray(prices, dtype=jnp.float32),
+                jnp.asarray(prices, dtype=jnp.float32),
-            float(human_params[0]),
+                float(human_params[0]),
-            float(human_params[1]),
+                float(human_params[1]),
-            float(agent_params[0]),
+                float(agent_params[0]),
-            float(agent_params[1]),
+                float(agent_params[1]),
-            float(noise_std),
+                float(noise_std),
-            jnp.asarray(baseline_prices, dtype=jnp.float32),
+                jnp.asarray(baseline_prices, dtype=jnp.float32),
-            float(lambda_coi),
+                float(lambda_coi),
-            float(info_value),
+                float(info_value),
-            float(reward_profit_weight),
+                float(reward_profit_weight),
-            keys,
+                keys,
+            )
+        )
+        best_idx = int(np.argmin(rewards))
+        return float(candidates[best_idx]), rewards
+    except Exception as exc:
+        # TPU contention / backend init failures can happen in distributed schedulers.
+        # Degrade to numpy path for the remainder of the process.
+        _JAX_RUNTIME_OK = False
+        print(f"PHANTOM_JAX_FALLBACK: {exc}")
+        return _fallback(
+            candidates,
+            prices,
+            human_params,
+            agent_params,
+            noise_std,
+            baseline_prices,
+            lambda_coi,
+            info_value,
+            reward_profit_weight,
         )
-    )
-    best_idx = int(np.argmin(rewards))
-    return float(candidates[best_idx]), rewards
 
 
 def _fallback(

engine/train.py

@@ -179,8 +179,29 @@ def _overrides_from_args(args: argparse.Namespace) -> dict[str, Any]:
 
 
 def main(argv: list[str] | None = None) -> None:
+    import subprocess
     import sys
 
+    # Ensure data is downloaded
+    from pathlib import Path
+
+    project_root = Path(__file__).parents[1]
+    data_dir = project_root / "experiments" / "collected_data"
+    needs_pull = (not data_dir.exists()) or (not any(data_dir.iterdir()))
+    if needs_pull:
+        try:
+            subprocess.run(["make", "data.pull"], cwd=str(project_root), check=True)
+        except (subprocess.SubprocessError, OSError) as exc:
+            sys.path.insert(0, str(project_root))
+            try:
+                from scripts.hf_data import pull
+
+                pull()
+            except (ImportError, OSError, RuntimeError, ValueError) as fallback_exc:
+                print(
+                    f"Warning: data.pull failed ({exc}); fallback pull failed ({fallback_exc})"
+                )
+
     configure_logging()
     raw_args = list(sys.argv[1:] if argv is None else argv)
     run_kind = _probe_run_kind(raw_args)

package.json

@@ -7,6 +7,8 @@
   ],
   "scripts": {
     "nx": "nx",
+    "manim:render": "nx run manim:render",
+    "manim:render-all": "nx run manim:render-all",
     "projects": "nx show projects",
     "graph": "nx graph",
     "web:dev": "nx run web:dev",

paper/defense/manim/render.py

@@ -1,84 +0,0 @@
-from __future__ import annotations
-
-import argparse
-import subprocess
-import sys
-from pathlib import Path
-
-from scenes import SCENE_ORDER
-
-
-def parse_args() -> argparse.Namespace:
-    parser = argparse.ArgumentParser(description="Render thesis-defense Manim scenes")
-    parser.add_argument(
-        "--quality",
-        default="qm",
-        choices=["ql", "qm", "qh", "qk"],
-        help="Manim quality preset",
-    )
-    parser.add_argument(
-        "--scene",
-        action="append",
-        dest="scenes",
-        help="Scene name; repeat flag to render many",
-    )
-    parser.add_argument(
-        "--preview", action="store_true", help="Open video after each render"
-    )
-    parser.add_argument(
-        "--list", action="store_true", help="List available scenes and exit"
-    )
-    return parser.parse_args()
-
-
-def validate_requested(requested: list[str]) -> list[str]:
-    missing = [name for name in requested if name not in SCENE_ORDER]
-    if missing:
-        choices = ", ".join(SCENE_ORDER)
-        raise ValueError(f"Unknown scenes: {', '.join(missing)}. Choices: {choices}")
-    return requested
-
-
-def run_manim(scene_file: Path, scene_name: str, quality: str, preview: bool) -> None:
-    cmd = [sys.executable, "-m", "manim"]
-    if preview:
-        cmd.append("-p")
-    cmd.extend([f"-{quality}", str(scene_file), scene_name])
-    subprocess.run(cmd, cwd=scene_file.parent, check=True)
-
-
-def main() -> int:
-    args = parse_args()
-    if args.list:
-        for scene in SCENE_ORDER:
-            print(scene)
-        return 0
-
-    scenes = validate_requested(args.scenes) if args.scenes else list(SCENE_ORDER)
-    scene_file = Path(__file__).resolve().parent / "scenes.py"
-
-    try:
-        for scene_name in scenes:
-            run_manim(
-                scene_file=scene_file,
-                scene_name=scene_name,
-                quality=args.quality,
-                preview=args.preview,
-            )
-    except FileNotFoundError:
-        print(
-            "manim executable not found. Install Manim in your Python environment.",
-            file=sys.stderr,
-        )
-        return 2
-    except ValueError as exc:
-        print(str(exc), file=sys.stderr)
-        return 2
-    except subprocess.CalledProcessError as exc:
-        return exc.returncode
-
-    return 0
-
-
-if __name__ == "__main__":
-    raise SystemExit(main())