From 98070acac0309f3e27746fdc17d909df17c21d93 Mon Sep 17 00:00:00 2001
From: Daniel Rosel <daniel@alves.world>
Date: Thu, 23 Oct 2025 10:42:21 +0200
Subject: [PATCH] concat of code

---
 Makefile               |  2 ++
 paper/concat_code.sh   | 76 ++++++++++++++++++++++++++++++++++++++++++
 paper/src/main.tex     |  4 +++
 paper/src/preamble.tex | 16 +++++++++
 4 files changed, 98 insertions(+)
 create mode 100755 paper/concat_code.sh

diff --git a/Makefile b/Makefile
index 8ae2461..6f5779a 100644
--- a/Makefile
+++ b/Makefile
@@ -11,6 +11,8 @@ $(BUILDDIR):
 	mkdir -p paper/$(BUILDDIR)
 
 pdf: $(BUILDDIR)
+	@echo "Concatenating source code..."
+	@bash paper/concat_code.sh
 	@cd $(SRCDIR) && \
 	$(LATEXMK) -pdf -jobname=$(JOBNAME) \
 		-interaction=nonstopmode -file-line-error \
diff --git a/paper/concat_code.sh b/paper/concat_code.sh
new file mode 100755
index 0000000..5890c91
--- /dev/null
+++ b/paper/concat_code.sh
@@ -0,0 +1,76 @@
+#!/bin/bash
+# Script to concatenate all code from source directories for LaTeX inclusion
+
+OUTPUT_FILE="paper/build/concatenated_code.tex"
+PROJECT_ROOT="/home/velocitatem/Documents/Projects/PHANTOM"
+
+# Create output directory if it doesn't exist
+mkdir -p "$(dirname "$OUTPUT_FILE")"
+
+# Clear the output file
+> "$OUTPUT_FILE"
+
+# Function to add a file to the concatenated output
+add_file() {
+    local filepath="$1"
+    local relpath="${filepath#$PROJECT_ROOT/}"
+
+    # Get file extension
+    local ext="${filepath##*.}"
+
+    # Map extensions to listings language
+    case "$ext" in
+        py) lang="Python" ;;
+        js|jsx|ts|tsx) lang="JavaScript" ;;
+        sh) lang="bash" ;;
+        yml|yaml) lang="Python" ;;
+        Dockerfile) lang="bash" ;;
+        *) lang="" ;;
+    esac
+
+    # Add section header and code listing
+    echo "\\subsection{${relpath}}" >> "$OUTPUT_FILE"
+    if [ -n "$lang" ]; then
+        echo "\\begin{lstlisting}[language=${lang},caption={${relpath}}]" >> "$OUTPUT_FILE"
+    else
+        echo "\\begin{lstlisting}[caption={${relpath}}]" >> "$OUTPUT_FILE"
+    fi
+    cat "$filepath" >> "$OUTPUT_FILE"
+    echo "" >> "$OUTPUT_FILE"
+    echo "\\end{lstlisting}" >> "$OUTPUT_FILE"
+    echo "" >> "$OUTPUT_FILE"
+}
+
+# Add header
+cat >> "$OUTPUT_FILE" << 'EOF'
+% Auto-generated code concatenation
+% DO NOT EDIT MANUALLY - Generated by concat_code.sh
+
+\section{Source Code}
+
+EOF
+
+# Process each directory
+echo "Concatenating code from source directories..."
+
+# Backend
+find "$PROJECT_ROOT/backend" -type f \( -name "*.py" -o -name "*.js" -o -name "*.sh" -o -name "*.yml" -o -name "*.yaml" \) | sort | while read -r file; do
+    add_file "$file"
+done
+
+# Experiments
+find "$PROJECT_ROOT/experiments" -type f \( -name "*.py" -o -name "*.js" -o -name "*.sh" -o -name "*.yml" -o -name "*.yaml" \) | sort | while read -r file; do
+    add_file "$file"
+done
+
+# Docker
+find "$PROJECT_ROOT/docker" -type f \( -name "*.py" -o -name "*.sh" -o -name "*.yml" -o -name "*.yaml" -o -name "Dockerfile*" \) | sort | while read -r file; do
+    add_file "$file"
+done
+
+# Web/src
+find "$PROJECT_ROOT/web/src" -type f \( -name "*.js" -o -name "*.jsx" -o -name "*.ts" -o -name "*.tsx" \) | sort | while read -r file; do
+    add_file "$file"
+done
+
+echo "Code concatenation complete: $OUTPUT_FILE"
diff --git a/paper/src/main.tex b/paper/src/main.tex
index 8ad64df..0f787b1 100644
--- a/paper/src/main.tex
+++ b/paper/src/main.tex
@@ -37,4 +37,8 @@ The primary objective of this thesis is to develop and validate pricing heuristi
 \input{chapters/01-intro}
 
 \printbibliography
+
+\appendix
+\input{../build/concatenated_code}
+
 \end{document}
diff --git a/paper/src/preamble.tex b/paper/src/preamble.tex
index 24127cf..31f3639 100644
--- a/paper/src/preamble.tex
+++ b/paper/src/preamble.tex
@@ -5,6 +5,22 @@
 \usepackage{subcaption}
 \usepackage{siunitx}
 
+\usepackage{listings}
+\usepackage{xcolor}
+
+\lstset{
+    basicstyle=\ttfamily\footnotesize,
+    breaklines=true,
+    frame=single,
+    numbers=left,
+    numberstyle=\tiny\color{gray},
+    keywordstyle=\color{blue},
+    commentstyle=\color{green!60!black},
+    stringstyle=\color{red},
+    showstringspaces=false,
+    captionpos=b
+}
+
 % Use biblatex instead of natbib (acmart default)
 \usepackage[backend=bibtex,style=numeric]{biblatex}
 \addbibresource{bib/references.bib}