13 agentic behavior runner v1 (#14)

* baseline setup of agent abstract

* feat: new implementation of simple AI agent that can follow a goal and return

* refactored import structure and created full tests

* pytest setup a github workflow to run tests + more ignores

* singularity for pushing

* fixing builds of PDFs

* inital structure of docs

* init styles and docs

* basic style implementation

* 13 create outline for research paper draft (#18)

* updated outline for paper from issue

* extra paper sections and some formalization of series data

* algorithms and acknowledgements

* updated outline for paper from issue

* Refactor docker-compose services to use individual Dockerfiles (#20)

* Initial plan

* Refactor services into individual Dockerfiles

Co-authored-by: velocitatem <60182044+velocitatem@users.noreply.github.com>

* Add EXPOSE directives to all Dockerfiles with port documentation

Co-authored-by: velocitatem <60182044+velocitatem@users.noreply.github.com>

---------

Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
Co-authored-by: velocitatem <60182044+velocitatem@users.noreply.github.com>

* 2 nextjs scaffold with store mode shop and admin session experiment wiring event emission v1 (#17)

* chore: cleaning gitignore

* formating and env documentation

* feat: context switching of hotel/airline depndent on env var via middleware

* fixed alignment and building

* wrong file

* prods

* fixed applying style

* better session cookie management

* tentative session storage with maybe using airtable

* migrated api of ingestion

* events and products apge

* fixing build

* 13 create outline for research paper draft (#18)

* updated outline for paper from issue

* extra paper sections and some formalization of series data

* algorithms and acknowledgements

* updated outline for paper from issue

* upadted text formating

* event unification

* refactor tracking to ues callbacks instead of refs

* implement a pricing display api with session passing

* moved middleware to proxy according to new changes in Nextjs

* refactoed kafka ingestion to go via backend not web-db

* Refactor docker-compose services to use individual Dockerfiles (#20)

* Initial plan

* Refactor services into individual Dockerfiles

Co-authored-by: velocitatem <60182044+velocitatem@users.noreply.github.com>

* Add EXPOSE directives to all Dockerfiles with port documentation

Co-authored-by: velocitatem <60182044+velocitatem@users.noreply.github.com>

---------

Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
Co-authored-by: velocitatem <60182044+velocitatem@users.noreply.github.com>

* fixing small bugs and adding exepriments to tracking

* added some doc

* fixing prod

* prod kafka server logging

* topic auto create

* pytest setup a github workflow to run tests + more ignores

* getting data from agents properly

* proper pipeline to handle data and build matrices

* fixing backend dumping

* fixing agents and ignore

* fixing import for tests

---------

Co-authored-by: Copilot <198982749+Copilot@users.noreply.github.com>

paper/concat_code.sh

@@ -16,10 +16,11 @@ mkdir -p "$(dirname "$OUTPUT_FILE")"
 add_file() {
     local filepath="$1"
     local relpath="${filepath#$PROJECT_ROOT/}"
+    local escaped_path="${relpath//_/\\_}"
 
     # Add section header and code listing (no language-specific highlighting)
-    echo "\\subsection{${relpath}}" >> "$OUTPUT_FILE"
-    echo "\\begin{lstlisting}[caption={${relpath}}]" >> "$OUTPUT_FILE"
+    echo "\\subsection{${escaped_path}}" >> "$OUTPUT_FILE"
+    echo "\\begin{lstlisting}[caption={${escaped_path}}]" >> "$OUTPUT_FILE"
     cat "$filepath" >> "$OUTPUT_FILE"
     echo "" >> "$OUTPUT_FILE"
     echo "\\end{lstlisting}" >> "$OUTPUT_FILE"